Path to the percolator binary []Input target file [mzid]Input decoy file [mzid]Input file given in the deprecated pin-xml format generated by e.g. sqt2pin with the -k option [,opt.]Read initial weights to the given file [,opt.]Output file []path to file in xml-output format (pout). Default is: pout.tab [Inactive]Output the computed features to the given file in tab-delimited format. A file with the features with the given file name will be created [Inactive]Output final weights to the given file [Inactive]Output tab delimited results for decoys into a file [Inactive]The text sent to standard out during the execution of TopPerc.The text sent to standard error during the execution of TopPerc. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)