Input file [featureXML,consensusXML,idXML]Protein inference results for the identification runs that were used to annotate the input (e.g. from ProteinProphet via IDFileConverter or Fido via FidoAdapter).#br#Information about indistinguishable proteins will be used for protein quantification. [idXML,opt.]Output file for protein abundances [csv,Inactive]Output file for peptide abundances [csv,Inactive]The text sent to standard out during the execution of ProteinQuantifier.The text sent to standard error during the execution of ProteinQuantifier. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)