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    <name>PeakPickerIterative</name>
    
    <shortDescription>
        Finds mass spectrometric peaks in profile mass spectra.
    </shortDescription>
    
    <fullDescription>
        <intro><p>Finds mass spectrometric peaks in profile mass spectra.</p>
		<p>
			<a href="http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_PeakPickerIterative.html">Web Documentation for PeakPickerIterative</a>
		</p>

        </intro>
        
		<option name="version">Version of the tool that generated this parameters file.</option>
		<option name="log">Name of log file (created only when specified)</option>
		<option name="debug">Sets the debug level</option>
		<option name="threads">Sets the number of threads allowed to be used by the TOPP tool</option>
		<option name="no_progress">Disables progress logging to command line</option>
		<option name="force">Overwrite tool specific checks.</option>
		<option name="test">Enables the test mode (needed for internal use only)</option>
		<option name="signal_to_noise_">Signal to noise value, each peak is required to be above this value (turn off by setting it to 0.0)</option>
		<option name="peak_width">Expected peak width half width in Dalton - peaks will be extended until this half width is reached (even if the intensitity is increasing). In conjunction with check_width_internally it will also be used to remove peaks whose spacing is larger than this value.</option>
		<option name="spacing_difference">Difference between peaks in multiples of the minimal difference to continue. The higher this value is set, the further apart peaks are allowed to be to still extend a peak. E.g. if the value is set to 1.5 and in a current peak the minimal spacing between peaks is 10 mDa, then only peaks at most 15 mDa apart will be added to the peak.</option>
		<option name="sn_bin_count_">Bin count for the Signal to Noise estimation.</option>
		<option name="nr_iterations_">Nr of iterations to perform (how many times the peaks are re-centered).</option>
		<option name="sn_win_len_">Window length for the Signal to Noise estimation.</option>
		<option name="check_width_internally">Delete peaks where the spacing is larger than the peak width (should be set to true to avoid artefacts)</option>
		<option name="ms1_only">Only do MS1</option>
		<option name="clear_meta_data">Delete meta data about peak width</option>

    </fullDescription>
    
    <ports>
		<inPort index="0" name="in [mzML]">input file  [mzML]</inPort>
		<outPort index="0" name="out [mzML]">output file [mzML]</outPort>
 </ports>
    <views>
        <view index="0" name="PeakPickerIterative Std Output">The text sent to standard out during the execution of PeakPickerIterative.</view>
        <view index="1" name="PeakPickerIterative Error Output">The text sent to standard error during the execution of PeakPickerIterative. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)</view>
    </views>    
</knimeNode>
