<?xml version="1.0" encoding="utf-8"?>
<!DOCTYPE knimeNode PUBLIC "-//UNIKN//DTD KNIME Node 2.0//EN" "http://www.knime.org/Node.dtd">
<knimeNode icon="generic_node.png" type="Manipulator">
    <name>IDScoreSwitcher</name>
    
    <shortDescription>
        Switches between different scores of peptide or protein hits in identification data
    </shortDescription>
    
    <fullDescription>
        <intro><p>Switches between different scores of peptide or protein hits in identification data</p>
		<p>
			<a href="http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_IDScoreSwitcher.html">Web Documentation for IDScoreSwitcher</a>
		</p>

        </intro>
        
		<option name="version">Version of the tool that generated this parameters file.</option>
		<option name="new_score">Name of the meta value to use as the new score</option>
		<option name="new_score_orientation">Orientation of the new score (are higher or lower values better?)</option>
		<option name="new_score_type">Name to use as the type of the new score (default: same as 'new_score')</option>
		<option name="old_score">Name to use for the meta value storing the old score (default: old score type)</option>
		<option name="proteins">Apply to protein scores instead of PSM scores</option>
		<option name="log">Name of log file (created only when specified)</option>
		<option name="debug">Sets the debug level</option>
		<option name="threads">Sets the number of threads allowed to be used by the TOPP tool</option>
		<option name="no_progress">Disables progress logging to command line</option>
		<option name="force">Overwrite tool specific checks.</option>
		<option name="test">Enables the test mode (needed for internal use only)</option>

    </fullDescription>
    
    <ports>
		<inPort index="0" name="in [idXML]">Input file [idXML]</inPort>
		<outPort index="0" name="out [idXML]">Output file [idXML]</outPort>
 </ports>
    <views>
        <view index="0" name="IDScoreSwitcher Std Output">The text sent to standard out during the execution of IDScoreSwitcher.</view>
        <view index="1" name="IDScoreSwitcher Error Output">The text sent to standard error during the execution of IDScoreSwitcher. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)</view>
    </views>    
</knimeNode>
