LC-MS dataset in centroid or profile mode [mzML]Set of all identified peptide groups (i.e. peptide pairs or triplets or singlets or ..). The m/z-RT positions correspond to the lightest peptide in each group. [consensusXML,Inactive]Optional output file containing the individual peptide features in 'out'. [featureXML,Inactive]Optional output file of MzQuantML. [mzq,Inactive]The text sent to standard out during the execution of FeatureFinderMultiplex.The text sent to standard error during the execution of FeatureFinderMultiplex. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)