Identification input file containing a search against a concatenated sequence database. Either specify '-in' alone or 'in_target' together with 'in_decoy' as input. [idXML,opt.]Identification input file containing a search against a target-only database. [idXML,opt.]Identification input file containing a search against a decoy-only database. [idXML,opt.]Identification output with annotated FDR [idXML]The text sent to standard out during the execution of FalseDiscoveryRate.The text sent to standard error during the execution of FalseDiscoveryRate. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)