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<knimeNode icon="generic_node.png" type="Manipulator">
    <name>DigestorMotif</name>
    
    <shortDescription>
        digests a protein database in-silico
    </shortDescription>
    
    <fullDescription>
        <intro><p>digests a protein database in-silico</p>
		<p>
			<a href="http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_DigestorMotif.html">Web Documentation for DigestorMotif</a>
		</p>

        </intro>
        
		<option name="version">Version of the tool that generated this parameters file.</option>
		<option name="missed_cleavages">the number of allowed missed cleavages</option>
		<option name="mass_accuracy">give your mass accuracy in ppb</option>
		<option name="min_length">minimum length of peptide</option>
		<option name="out_option">indicate 1 (peptide table only), 2 (statistics only) or (both peptide table + statistics)</option>
		<option name="enzyme">The enzyme used for peptide digestion.</option>
		<option name="motif">the motif for the restricted peptidome</option>
		<option name="log">Name of log file (created only when specified)</option>
		<option name="debug">Sets the debug level</option>
		<option name="threads">Sets the number of threads allowed to be used by the TOPP tool</option>
		<option name="no_progress">Disables progress logging to command line</option>
		<option name="force">Overwrite tool specific checks.</option>
		<option name="test">Enables the test mode (needed for internal use only)</option>

    </fullDescription>
    
    <ports>
		<inPort index="0" name="in [fasta]">FASTA input file [fasta]</inPort>
		<outPort index="0" name="out [idXML]">output file (peptides)#br# [idXML]</outPort>
 </ports>
    <views>
        <view index="0" name="DigestorMotif Std Output">The text sent to standard out during the execution of DigestorMotif.</view>
        <view index="1" name="DigestorMotif Error Output">The text sent to standard error during the execution of DigestorMotif. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)</view>
    </views>    
</knimeNode>
