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<knimeNode icon="generic_node.png" type="Manipulator">
    <name>Digestor</name>
    
    <shortDescription>
        Digests a protein database in-silico.
    </shortDescription>
    
    <fullDescription>
        <intro><p>Digests a protein database in-silico.</p>
		<p>
			<a href="http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_Digestor.html">Web Documentation for Digestor</a>
		</p>

        </intro>
        
		<option name="version">Version of the tool that generated this parameters file.</option>
		<option name="out_type">Set this if you cannot control the filename of 'out', e.g., in TOPPAS.</option>
		<option name="missed_cleavages">The number of allowed missed cleavages</option>
		<option name="min_length">Minimum length of peptide</option>
		<option name="max_length">Maximum length of peptide</option>
		<option name="enzyme">The type of digestion enzyme</option>
		<option name="log">Name of log file (created only when specified)</option>
		<option name="debug">Sets the debug level</option>
		<option name="threads">Sets the number of threads allowed to be used by the TOPP tool</option>
		<option name="no_progress">Disables progress logging to command line</option>
		<option name="force">Overwrite tool specific checks.</option>
		<option name="test">Enables the test mode (needed for internal use only)</option>

    </fullDescription>
    
    <ports>
		<inPort index="0" name="in [fasta]">input file [fasta]</inPort>
		<outPort index="0" name="out [idXML,fasta]">Output file (peptides) [idXML,fasta]</outPort>
 </ports>
    <views>
        <view index="0" name="Digestor Std Output">The text sent to standard out during the execution of Digestor.</view>
        <view index="1" name="Digestor Error Output">The text sent to standard error during the execution of Digestor. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)</view>
    </views>    
</knimeNode>
