TOPPAS.desktop BSD-3-Clause BSD-3-Clause TOPPAS

Pipeline editor of OpenMS (a mass spectrometry (MS) software for Proteomics and Metabolomics)

TOPPAS is the OpenMS TOPP Pipeline Assistant. It can create processing pipelines using OpenMS TOPP tools as building blocks.

OpenMS is a powerful set of tools as well as a C++ library to process low and high-resolution LC-MS(-MS) mass spectrometry data.

OpenMS is modular, consisting of more than 80 chainable TOPP tools (executables). It features a graphical data viewer (TOPPView), a pipeline editor (TOPPAS) and wrappers for most tandem-MS search engines (like Mascot, MSGF+ and X!Tandem). The OpenMS library itself comes with Python bindings for rapid prototyping.

http://www.openms.de/current_doxygen/html/TOPPAS_simple_example.png A simple example pipeline created in TOPPAS and successfully executed. http://www.openms.de open-ms-developers@lists.sourceforge.net