transition file [TraML]Swath files that were used to extract the transitions. If present, SWATH specific scoring will be applied. [mzML,opt.]output file [tsv]The text sent to standard out during the execution of OpenSwathDIAPreScoring.The text sent to standard error during the execution of OpenSwathDIAPreScoring. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)