Identification input file which contains a search against a concatenated sequence database. Either specify '-in' alone or 'fwd_in' together with 'rev_in' as input. [idXML,opt.]Identification input to estimate FDR, forward run. [idXML,opt.]Identification input to estimate FDR, decoy run. [idXML,opt.]Identification output with annotated FDR [idXML]The text sent to standard out during the execution of FalseDiscoveryRate.The text sent to standard error during the execution of FalseDiscoveryRate. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)