Input spectrum file [mzML]Protein/peptide identifications file [idXML]The Java executable. Usually Java is on the system PATH. If Java is not found, use this parameter to specify the full path to Java [,opt.]Output file [idXML]The text sent to standard out during the execution of LuciphorAdapter.The text sent to standard error during the execution of LuciphorAdapter. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)