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<!DOCTYPE knimeNode PUBLIC "-//UNIKN//DTD KNIME Node 2.0//EN" "http://www.knime.org/Node.dtd">
<knimeNode icon="generic_node.png" type="Manipulator">
    <name>BaselineFilter</name>
    
    <shortDescription>
        Removes the baseline from profile spectra using a top-hat filter.
    </shortDescription>
    
    <fullDescription>
        <intro><p>Removes the baseline from profile spectra using a top-hat filter.</p>
		<p>
			<a href="http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_BaselineFilter.html">Web Documentation for BaselineFilter</a>
		</p>

        </intro>
        
		<option name="version">Version of the tool that generated this parameters file.</option>
		<option name="struc_elem_length">Length of the structuring element (should be wider than maximal peak width - see documentation).</option>
		<option name="struc_elem_unit">Unit of 'struc_elem_length' parameter.</option>
		<option name="method">The name of the morphological filter to be applied. If you are unsure, use the default.</option>
		<option name="log">Name of log file (created only when specified)</option>
		<option name="debug">Sets the debug level</option>
		<option name="threads">Sets the number of threads allowed to be used by the TOPP tool</option>
		<option name="no_progress">Disables progress logging to command line</option>
		<option name="force">Overwrite tool specific checks.</option>
		<option name="test">Enables the test mode (needed for internal use only)</option>

    </fullDescription>
    
    <ports>
		<inPort index="0" name="in [mzML]">input raw data file  [mzML]</inPort>
		<outPort index="0" name="out [mzML]">output raw data file  [mzML]</outPort>
 </ports>
    <views>
        <view index="0" name="BaselineFilter Std Output">The text sent to standard out during the execution of BaselineFilter.</view>
        <view index="1" name="BaselineFilter Error Output">The text sent to standard error during the execution of BaselineFilter. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)</view>
    </views>    
</knimeNode>
