input raw/picked data file [mzML]output consensusXML file with quantitative information [consensusXML]Optional output file of MzQuantML. [mzq]output statistics as tab-separated file (readable by R or Excel or ...) [tsv]The text sent to standard out during the execution of TMTAnalyzer.The text sent to standard error during the execution of TMTAnalyzer. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)