Input files separated by blanks (all must have the same file type) [featureXML,consensusXML,idXML]File to use as reference (same file format as input files required) [featureXML,consensusXML,idXML,opt.]Output files separated by blanks. Either 'out' or 'trafo_out' has to be provided. They can be used together. [featureXML,consensusXML,idXML]Transformation output files separated by blanks. Either 'out' or 'trafo_out' has to be provided. They can be used together. [trafoXML]The text sent to standard out during the execution of MapAlignerIdentification.The text sent to standard error during the execution of MapAlignerIdentification. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)