Input file (LC-MS raw data) [mzML]Input file (peptide identifications) [idXML]Output file (features) [featureXML]Output file (assay library) [traML]Output file (chromatograms) [mzML]Output file (RT transformation) [trafoXML]The text sent to standard out during the execution of FeatureFinderIdentification.The text sent to standard error during the execution of FeatureFinderIdentification. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)