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    <name>PrecursorMassCorrector</name>
    
    <shortDescription>
        Corrects the precursor entries of MS/MS spectra, by using MS1 information.
    </shortDescription>
    
    <fullDescription>
        <intro><p>Corrects the precursor entries of MS/MS spectra, by using MS1 information.</p>
		<p>
			<a href="http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_PrecursorMassCorrector.html">Web Documentation for PrecursorMassCorrector</a>
		</p>

        </intro>
        
		<option name="version">Version of the tool that generated this parameters file.</option>
		<option name="precursor_mass_tolerance">Maximal deviation in Th which is acceptable to be corrected;#br#this value should be set to the instruments selection window.</option>
		<option name="max_charge">Maximal charge that should be assumed for precursor peaks</option>
		<option name="intensity_threshold">Intensity threshold value for isotope wavelet feature finder, please look at the documentation of the class for details.</option>
		<option name="log">Name of log file (created only when specified)</option>
		<option name="debug">Sets the debug level</option>
		<option name="threads">Sets the number of threads allowed to be used by the TOPP tool</option>
		<option name="no_progress">Disables progress logging to command line</option>
		<option name="force">Overwrite tool specific checks.</option>
		<option name="test">Enables the test mode (needed for internal use only)</option>

    </fullDescription>
    
    <ports>
		<inPort index="0" name="in [mzML]">Input mzML file containing the spectra. [mzML]</inPort>
		<inPort index="1" name="feature_in [featureXML]">Input featureXML file, containing features; if set, the MS/MS spectra precursor entries #br#will be matched to the feature m/z values if possible. [featureXML,opt.]</inPort>
		<outPort index="0" name="out [mzML]">Output mzML file. [mzML]</outPort>
 </ports>
    <views>
        <view index="0" name="PrecursorMassCorrector Std Output">The text sent to standard out during the execution of PrecursorMassCorrector.</view>
        <view index="1" name="PrecursorMassCorrector Error Output">The text sent to standard error during the execution of PrecursorMassCorrector. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)</view>
    </views>    
</knimeNode>
