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<!DOCTYPE knimeNode PUBLIC "-//UNIKN//DTD KNIME Node 2.0//EN" "http://www.knime.org/Node.dtd">
<knimeNode icon="generic_node.png" type="Manipulator">
    <name>ImageCreator</name>
    
    <shortDescription>
        Transforms an LC-MS map into an image.
    </shortDescription>
    
    <fullDescription>
        <intro><p>Transforms an LC-MS map into an image.</p>
		<p>
			<a href="http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_ImageCreator.html">Web Documentation for ImageCreator</a>
		</p>

        </intro>
        
		<option name="version">Version of the tool that generated this parameters file.</option>
		<option name="out_type">The image format. Set this if you want to force a format not reflected by the 'out' filename.</option>
		<option name="width">Number of pixels in m/z dimension.#br#If 0, one pixel per Th.</option>
		<option name="height">Number of pixels in RT dimension.#br#If 0, one pixel per spectrum.</option>
		<option name="background_color">Background color e.g.: &quot;#FF0000&quot; to choose red as background color</option>
		<option name="feature_color">Feature color e.g.: &quot;#00FF00&quot; to choose green as feature color</option>
		<option name="gradient">Intensity gradient that defines colors for the range between 0 and 100.#br#Example: '0,#FFFFFF;50,#FF0000;100,#000000'</option>
		<option name="max_intensity">Maximum peak intensity used to determine range for colors.#br#If 0, this is determined from the data.</option>
		<option name="log_intensity">Apply logarithm to intensity values</option>
		<option name="transpose">flag to transpose the resampled matrix (RT vs. m/z).#br#Per default, dimensions run bottom-up in RT and left-right in m/z.</option>
		<option name="precursors">Mark locations of MS2 precursors.#br#</option>
		<option name="precursor_color">Color for precursor marks (color code or word, e.g. 'black') (requires 'precursors' flag to be active)</option>
		<option name="precursor_size">Size of the precursor marks (requires 'precursors' flag to be active)</option>
		<option name="log">Name of log file (created only when specified)</option>
		<option name="debug">Sets the debug level</option>
		<option name="threads">Sets the number of threads allowed to be used by the TOPP tool</option>
		<option name="no_progress">Disables progress logging to command line</option>
		<option name="force">Overwrite tool specific checks.</option>
		<option name="test">Enables the test mode (needed for internal use only)</option>

    </fullDescription>
    
    <ports>
		<inPort index="0" name="in [mzML]">input file  [mzML]</inPort>
		<inPort index="1" name="in_featureXML [featureXML]">input file  [featureXML,opt.]</inPort>
		<outPort index="0" name="out [png,jpg,bmp,tiff,ppm]">output file [png,jpg,bmp,tiff,ppm]</outPort>
 </ports>
    <views>
        <view index="0" name="ImageCreator Std Output">The text sent to standard out during the execution of ImageCreator.</view>
        <view index="1" name="ImageCreator Error Output">The text sent to standard error during the execution of ImageCreator. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)</view>
    </views>    
</knimeNode>
